Yuri Lyubich, Valery Kirzhner, Anna Ryndin (2001) Mathematical Theory of Phenotypical Selection, Advances in Applied Mathematics, 26, 4, pp. 330-352. (Article.phen)

H. Sh. Weinberg; A. B. Korol; V. M. Kirzhner; A. Avivi; T. Fahima; Eviatar Nevo; S. Shapiro; G. Rennert; O.Piatak; E. I. Stepanova; E. Skvarskaja. (2001) Very high mutation rate in offspring of Chernobyl accident liquidators. Philosophical Transaction Royal Society B., 268,1471,1001 � 1005

E.N.Trifonov, A. Kirzhner, V. Kirzhner, I.N. Berezovsky (2001) Distinct Stages of Protein Evolution as Suggested by Protein Sequence Analysis. J.Mol. Evol., 53, (4-5): 394-401.

I.N. Berezovsky, A.Kirzhner, V. Kirzhner, E.N. Trifonov. (2001) Protein folding: Looping from hydrophobic nuclei Proteins. 45 (4): 346-350.

Ryndin, A., Kirzhner, V. Nevo, E. and Korol, A. (2001) Polymorphism maintenance in populations with mixed random mating and apomixis subjected to stabilizing and cyclical selection. J. Theoretical Biol. 212, 2, 169-181. (Article.apomixis)

Fahima T, Roder MS, Wendehake K, Kirzhner VM, Nevo E. (2002) Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Israel. Theor. Appl. Genetics, 104 (1): 17-29.

Y-C Li , MS Ro�der , T Fahima , VM Kirzhner , A Beiles, AB Korol and E Nevo, (2002) Climatic effects on microsatellite diversity in wild emmer wheat (triticum dicoccoides) at the yehudiyya 38 microsite, Israel. Heredity, 89, 2, 127-132.

Valery M. Kirzhner, Abraham B. Korol, Alexander Bolshoy and Eviatar Nevo (2002) Compositional spectrum - revealing patterns for genomic sequence characterization and comparison. Physica A, 312, 447- 457. (http://www.sciencedirect.com/science/journal/03784371) (Article.cs)

Qingyang Huang, Youchun Li, Alex Beharav, Valery Kirzhner, and Eviatar Nevo (2002) Mosaic microecological differential stress causes adaptive microsatellite divergence in wild barley, Hordeum spontaneum, at Neve Yaar, Israel., Genome, 45, 1216-1229.

Berezovsky, I.N., Kirzhner, V.M., Kirzhner, A., Rosenfeld, V.R. & Trifonov, E.N. (2002) Closed loops: persistence of the protein chain returns. Protein Engineering, 15 (12): 955-957.

Trifonov, E. N., Kirzhner, A., Kirzhner, V.M., Berezovsky, I. N., (2003) An eye-opener to protein structure. ComPlexUs, 1, 29-37.

Y-C Li, T Fahima, MS Ro� der, VM Kirzhner, A Beiles, AB Korol and E Nevo. (2003) Genetic effects on microsatellite diversity in wild emmer wheat (Triticum dicoccoides) at the Yehudiyya microsite, Israel Heredity, 90, 150-156.

Yuri Lyubich, Valery Kirzhner (2003) Mathematical frameworks for phenotypical selection and epistasis J. Theoretical Biol., 221, 625-638.(Article.selep)

V.M. Kirzhner, E. Nevo, A.B. Korol and A. Bolshoy. (2003). One promising approach to a large scale comparison of genomic sequences Acta Biotheoretica 51, 2, 73-89. (Article.comp)

E.D. Owuor, A.Beharav, T. Fahima, V.M.Kirzhner, A.B. Korol and E. Nevo. (2003). Microscale ecological stress causes RAPD molecular selection in wild barley, Neve Yaar microsite, Israel. Genetic Resources and Crop Evolution, 50, 213�224

Yuri Lyubich, Valery Kirzhner. (2003) Finiteness of Equilibria Set for a Nonepistatic Selection under Multilocus Mendel Dominance. Appl. Math. Letters, 16, 421-424. (Article.multipl)

Hillel J, Groenen MA, Tixier-Boichard M, Korol AB, David L, Kirzhner VM, Burke T, Barre-Dirie A, Crooijmans RP, Elo K, Feldman MW, Freidlin PJ, Maki-Tanila A, Oortwijn M, Thomson P, Vignal A, Wimmers K, Weigend S. (2003) Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA pools. Genet Sel Evol. 35(5):533-57.

V.M. Kirzhner, A.V. Ryndin, E. Nevo, A.B. Korol (2003) Balancing Selection, Recombination Rate and Polymorphism: a Commentary. Preprint series: ESI preprints 1334. (http://www.esi.ac.at/preprints/ESI-Preprints.html)

Valery Kirzhner and Yuri Lyubich. (2003) The multilocus multiplicative selection equilibria. Appl. Math. Letters, 16 (6),853-856. (Article.epis)

Berezovsky IN, Kirzhner A, Kirzhner VM, Rosenfeld VR, Trifonov EN.(2003) Protein sequences yield a proteomic code. J Biomol Struct Dyn. 21(3):317-26.

Berezovsky IN, Kirzhner A, Kirzhner VM, Trifonov EN. (2003) Spelling protein structure. J Biomol Struct Dyn. 21(3):327-40.

Kis-Papo T., Oren A., Kirzhner V., Wasser S., Nevo E. (2003) Evolution of genome diversity and sex at the edge of life: fungal life under hypersaline Dead Sea stress. Proc Natl Acad Sci USA. 9;100(25):14970-5.

V.Kirzhner, V.Frencel, A.Korol.(2004) Complex dynamics of multilocus genetidc systems. In Evolutionary Theory and Processes: Modern Horizons (ed.S.Wasser) 65-109.

Lyubich Yu.I., Kirzhner V.M. and R. Tutunikov (2004) Explicit solution of the evolutionary equations for single locus autosomal polyploid populations. Preprint series: International Erwin Schrodinger Institute for Mathematical Physics ESI (Vienn) preprints 1500. (http://www.esi.ac.at/preprints/ESI-Preprints.html)

Peleg O, Kirzhner V, Trifonov E, Bolshoy A. Overlapping messages and survivability. J Mol Evol. 2004 Oct;59(4):520-7.

Valery Kirzhner, Alexander Bolshoy, Zeev Volkovich, Abraham Korol, Eviatar Nevo. (2005) Large scale genome clustering across life based on a linguistic approach. BioSystem 81,3, 208-222. (manuscript.clst)

Z. Volkovich, V. Kirzhner, A. Bolshoy, A. Korol and E. Nevo. (2005) The Method of N-grams in Large-Scale Clustering of DNA texts Pattern Recognition 38, 11, 1902-1912. (Article.ngram)

A. Paz, V. Kirzhner, E. Nevo, and A. Korol (2006) Coevolution of DNA-Interacting Proteins and Genome "Dialect" Molecular Biology and Evolution 23(1):56-64.

I. Grishkan, A. Beharav, V. Kirzhner and E. Nevo Adaptive Spatiotemporal Distribution of Soil Microfungi in "Evolution Canyon" III, Nahal Shaharut, Extreme Southern Negev Desert, Israel Biological Journal of the Linnean Society. (in press)

Ahu Altinkut, Violetta Kotseruba, Valery M. Kirzhner, Eviatar Nevo, Olga Raskina, and Alexander Belyayev.(2006) Ac-like transposons in populations of wild diploid Triticeae species: comparative analysis of chromosomal distribution. Chromosome Research 14:307�317.

M. Gorel and V.M. Kirzhner (2006) Degenerate coding and sequence compacting. Preprint series: ESI preprints 1819. (http://www.esi.ac.at/preprints/ESI-Preprints.html)

Valery Kirzhner, A. Paz, Z. Volkovich, E. Nevo and A. Korol (2007) Different Clustering of Genomes Across Life Using the A-T-C-G and Degenerate R-Y Alphabets: Early and Late Signaling on Genome Evolution? Journal of Molecular Evolution 64, 4:448-456.

Z. Volkovich, V. Kirzhner, Z. Barzily, S. Hosid and K. Korenblat,(2010) A Linguistic Approach to Classification of Bacterial Genomes/ Pattern Recognition 43,3: 1083-1093.

Alexander Bolshoy, Zeev Volkovich, Valery Kirzhner, Zeev Barzily. Genome Clustering: From Linguistic Models to Classification of Genetic Texts (Studies in Computational Intelligence), Springer, 2010.

V.Kirzhner, S. Frenkel and A. Korol,(2011) Minimal-Dot Plot: "Old Tale in New Skin" about Sequence Comparison, Information Sciences 181,8: 1454-1462.

V.Kirzhner, S. Frenkel and A. Korol,(2011) Non-alignment comparison of human and high primate genomes, arXiv:1111.6172v1 [q-bio.GN]

V.Kirzhner, S. Frenkel and A. Korol,(2012) Organizational Heterogeneity of Vertebrate Genomes, PLoS ONE 7(2):1-15.

V.Kirzhner, Z. Volkovich (2012) Evaluation of the Genome Mixture Contents by Means of the Compositional Spectra Method, arXiv:1203.2178v1 [q-bio.GN].

V. Kirzhner, Z. Volkovich (2012) Model of Overlapping Messages with Degenerate Coding, Applied Mathematics 3: 188-197.